Friday, 14 April 2017

The lab-based PhD survival guide: part one

Sophie Arthur is a 3rd year PhD student at University of Southampton studying embryonic stem cell metabolism. She is also involved in a variety of scicomm activities – she is admin for a science bloggers database which you can join on Twitter @SciBlogHub and is also the publicist for the Pint of Science festival in Southampton this year – all of which you can stay updated on through her social media accounts. In today’s guest post, she shares some tips and advice about doing a PhD in a lab environment and how you can make it to the finish line.

If you want to see more about Sophie’s life as a lab-based PhD student, she writes a blog called Soph talks Science and is often showing insights into everyday lab life and attempts to break down those stereotypes associated with being a scientist on her social media accounts which you can follow in the links below:





A PhD is hard enough when you are fully prepared for what lies ahead. Let alone when you have no idea what to expect. I was one of those students. Being the first member of my family to go to university and coming from a small village ‘out in the sticks’ in the rural county of Pembrokeshire in Wales – I had no idea what to expect after finishing my undergraduate degree. I decided to embark on the adventure that is doing a PhD and accepted my position with little consideration about what it actually involved. Two months before I was due to start in 2014, I was scouring the internet to find some insights about what life as a PhD student in a research lab environment actually meant. But what did I find? Nothing. Nothing very insightful at least, just several accounts of previous PhD students saying it was hard! It was really hard! So, with the sole advice of how difficult the next four years of my life were going to be, I packed up and moved to Southampton to start my mission to become Dr. Arthur.

Two and a half years down the line, I have learnt so much about the PhD experience in a lab and wanted to fill that gap about lab-based PhD experiences so I set up my blog ‘Soph talks science’ to document different aspects of lab life and I thought I could share some advice for surviving a lab-based PhD on a platform like this aimed at current and prospective PhD students so they can be much more prepared than I was. So, here is my lab-based PhD survival guide. Some of these things will be applicable to PhDs in other fields, but they are things that have helped me survive Grad school.

Experiments will fail!

Probably not a great one to start off with but I believe it is the first thing you need to accept and come to terms with! I promise that it happens to all scientists no matter whether they are new to the lab research scene or they are a seasoned pro!

You would think that a routine experiment like a Western blot or a PCR reaction that millions of scientists use every day would be flawless and work every time right? Well you couldn’t be more wrong! Sometimes, something will work without a hitch a hundred times and then inexplicably just stop working! This usually happens when you need to get that final repeat to get a significant result or you need that last piece of the puzzle for your publication – so it is arguably the most frustrating thing about working in the lab! I’ve had the opportunity to teach some undergrad students during my lab time and they just can’t grasp it when I tell them that it happens sometimes and no one can explain why. What they don’t understand even more is that I don’t get down or caught up by it. I just start it again. I have had my fair share of experiments just not working for no reason and I have just learnt that it happens and there’s nothing I can do about it so I may as well just fix it by starting again!

As a fresh-faced PhD newbie, you will be watching other more senior PhD students around you doing it with ease – but I assure you that they were feeling exactly the same way as you have and they made as many mistakes as you and just have learnt from them! These failed experiments to not make you a bad scientist, in fact I truly believe they make you a better scientist because you learn to troubleshoot and be more creative with your experiments. So, when you see that blank agarose gel or hideously dirty Western blot, grieve for a few minutes and then figure out how to fix it!


You will need help

And don’t be afraid to ask for it either! Everyone around you wants to see you succeed and more than likely they have encountered the problem you’re having, so they can either help you out to fix it or they may have a handy top tip to avoid it happening again!

So many people go round trying to solve the problem themselves because they think they should do it alone! Don’t do that! Talk to someone about an issue you are having and there will be someone willing to listen and help you. What’s the point in wasting days reading about trying to solve your problem and getting really worked up over it when the person sat in the opposite corner to you in the office will have the answer? Plus, asking for help is so much better than ruining an experiment because you feel bad about disturbing someone.



 Get a hobby/non-lab friends

Basically don’t take your work home with you! And it also means that if you have plans outside of work, you won’t spend every hour under the sun in the lab. Now don’t get me wrong, there will probably be times where you need to be in the lab for 18 hours a day or have to come in at weekends or at 2am to take a time point reading – but do not let it become your routine. This lab experience does demand that you do other activities that helps your mind switch off from science, and think about other things! For me, this has been going to the gym which is a great stress reliever – the problem is just getting me to the gym in the first place – or watching some films and TV series lounging at home on the sofa.

You must take breaks – things can get on top of you if you’re always in the lab and you are allowed days off even if your supervisor would rather you be slaving away in the lab all day! Your PhD stipend might not stretch far enough to do some travelling but if you are amazing at budgeting then schedule these intentional PhD breaks with long weekends in cities throughout Europe or wherever is easiest for you. I have the time to do these trips but just wish I had the money to do it. But even if you can’t jet off to a foreign land, just taking a week off and spending it chilling at home will do you and your mental state a world of good! I’ve spoken to so many people who have taken solo trips and taken 2 weeks off before their final stint in the lab or before they started writing their PhD thesis, just to clear their minds and prepare for the next tasks ahead – and they have said that they don’t know how they would have finished if they had not taken that crucial break from the lab.

But in addition to getting some non-lab friends in the form of your new football team or travel buddy, get involved in your department and make some friends that work in the same place as you but not in the same lab! They may be able to hook you up with an antibody you are short of at 7pm and desperate to go home, or if you need some different cells as a positive control for your experiment – they are your go to sources – not that I’m speaking from experience. Now – I’m not saying that you should make these friends just to use them for your benefit as that would be slightly sociopathic – but it’s great to be a part of a supportive community. They are also great people to have lunch with instead of your lab mates in case ‘John’ is really irritating you today – and they also don’t work on the same things as you so you won’t have to talk about lab issues!



             Imposter syndrome is real!

I’ve heard a lot of talk about ‘imposter syndrome’ during my few years in grad school. Imposter syndrome is the belief that you don’t belong and you’re not clever enough to be here. But at the beginning – you are going to feel stupid. It’s normal! I’m in my third year of my PhD and the most senior PhD student in my lab now and I still feel stupid. But I feel a lot less stupid now than when I was a first year in the lab and everyone was talking science and troubleshooting in our weekly lab meetings and my eyes were just glazed over and panicking about how I would ever learn all this stuff. I used to watch the more senior students in my lab manage about 4 different experiments a day and all with ease whilst I used to get worked up about doing one Western blot. Now – I could easily be doing six or seven Western blots in a day whilst culturing my cells and something else whilst fitting it around various lab meetings and supervisor meetings! But I have learnt that everyone feels that way! Even the ‘smart kids’! It’s just part of the PhD journey – embrace it!



 Get involved in some scicomm/public engagement

Scientists are a notoriously anti-social demographic, but during my time in the lab I have realised just how important it is to talk about your research with the public. Now, I’m not saying you need to tell them about each and every gel you run or the results from your latest PCR. Tell them in simple terms what you do – you don’t want to scare everyone away with lots of science jargon – but more importantly you need to make them care about your research! Tell them why your research is important and how it will affect them!

Conveying my PhD which is basic mechanistic biology based research and involves a lot of metabolism and metabolic pathways that everyone hated in school, let alone however many years after they finished learning about it, was so difficult for me initially. I just couldn’t think of a way to tell my research story in simple terms without all the jargon. But during my second year of my PhD, I entered the 3 Minute Thesis competition; the challenge was to explain your research to a lay audience using one static slide in under 3 minutes. I thought for weeks and weeks about a simple concept and in the end I found my analogy – my stem cell hotel resort on top of a snowy mountain complete with mini bar. Now that probably doesn’t mean a lot to you there, but I’ve written about it in one of my blog post from February 2016 and I think it will make sense with everything else. But it was entering that competition that made me think a completely different way about how I could explain my research to the public and I haven’t stop there – I now write two blog posts a week about a variety of science-y things and I’m involved in the Pint of Science festival so follow me to keep up to date on those!

But I want to finish this section by just stressing how important I think science communication is! It is so crucial that the public knows the basics of what we are doing behind closed doors and what we want to achieve from this! If it comes from scientists directly, it cannot get misconstrued in the media for example. Plus I’ve always found that it helps me think about what my research means from a different perspective as you get asked all sorts of questions – so never underestimate the intelligence of your audience. They might help you out without them even knowing it! 



So, there it is! My five top tips to surviving a lab-based PhD. Now while this knowledge might make your PhD journey a little easier, unfortunately it is not going to make the next few years of your life much easier. You will still need to work hard to get out of it what you want – BUT hopefully they will help you to stay social and keep your sanity.

This time will fly I assure you! I feel like I only started a few months ago but I am finishing next year! The best advice I could probably give you is just to get stuck in and make the most of your time there! Get those papers out as soon as you can because you don’t want to be going through that stress when trying to write up your thesis at the end too. But most of all – enjoy it! You will have bad days but you definitely will have good days too plus you will make some friends for life! Just make the most of it J




Disclaimer: pictures have all been made by Sophie Arthur. 

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