Tuesday, 25 April 2017

The lab-based PhD survival guide: part two


Sophie Arthur is a 3rd year PhD student at University of Southampton studying embryonic stem cell metabolism. She is also involved in a variety of other scicomm activities – she is admin for a science bloggers database which you can join on Twitter @SciBlogHub and is also the publicist for the Pint of Science festival in Southampton this year – all of which you can stay updated on through her social media accounts. In today’s guest post, she shares some more tips and advice about doing a PhD in a lab environment in addition to those found in Part One.

If you want to see more about Sophie’s life as a lab-based PhD student, she writes a blog called Soph talks Science and is often showing insights into everyday lab life and attempts to break down those stereotypes associated with being a scientist on her social media accounts which you can follow in the links below:



I’m back with some more tips! After reading Volume 1, I realised I missed out some crucial advice so I just had to write a second volume of my lab-based PhD survival guide.
So, what did we learn from the first volume? You need to stay social, get talking about your research with anyone who will listen, do not be afraid to ask for help and, probably the hardest one to accept, just come to terms with the fact that experiments will inexplicably stop working more often than you think! If you missed them, check out my lab-based PhD survival guide part one.

But if the advice from Volume 1 has not helped you enough, here’s some more advice that will hopefully help you on your PhD journey.

Be super organised and super flexible.

Organisation is the key to doing a PhD – from organising your day, to organising your samples to organising your results and files. If you’re about to embark on this amazing journey that is doing a PhD – I implore you to start this right from the beginning. Your final year self will thank you! Now when I say be organised – I mean everything! I label every sample I get and number them, they are all stored in various boxes which are all labelled too. I have a spreadsheet with all the sample numbers, what those samples are and what box you will find them in plus the page numbers of my lab book that I collected those samples, processed those samples and used those samples in whichever experiment I needed to. That might sound like overkill! And it probably is! But it makes your work so much easier to follow! I also think it’s crucial to write down the lot number and catalogue numbers of the reagents you use – especially antibodies if you use so many like I do. It might explain an issue you encounter if you have changed lot recently. Every buffer you make up to – make a note of that in your lab book – it might explain a technical issue you’re having with your Western as you might have got the wrong pH buffer. Basically, let your lab book be your bible and keep it up to date! I usually do it at the end of every day before I go home.

Flexibility is not something every PhD student will have the luxury of – but it is one of the joys of doing a PhD in an academic lab. If you fancy starting at 10am and working later, or if you are an early bird and want to start at 7am and then be out of there by 3pm then you have the option to. But obviously – get your work done and don’t overdo it! There is no point in doing 10am-3pm every day and not getting the most out of your PhD experience. You also have to be accommodating for your lab mates needs too. You might need the same piece of equipment so communicate so you can stagger your start times, or reschedule your work for another day and do something else today!


A happy workspace is such a key influence.

I’m talking about your desk – at home or at work! Personalise it, surround it and fill it with pretty, inspirational and motivational things. However you decide you want your desk, maintain it! Because you don’t want to come out of the lab and then be faced with a messy, unorganised desk if you’re a tidy person for example. I try to keep my desk as de-cluttered as possible. All full lab books, my transfer thesis and previous writing, as well as protocols and reagent datasheets are all on the shelf above my desk. In the very near vicinity but not piling up in my workspace. The edge of that shelf is laced with post it notes of key things I need to reference quite often, like antibody dilutions and calculations I often use. There’s some motivational certificates that I’ve won and a few of my favourite photos to spur me on when those experiments have failed inexplicably yet again!

Now you will not be able to get through your PhD without a few desk essentials! I’m talking coffee (I’ve heard this gets most PhD students through the day although I don’t drink it myself!), a cute water bottle, funky pens, pencils and diaries and of course a reliable computer! Reliable is the key word there as it has got to last you 4 years in my case! Put some snacks in your desks drawers that are going to keep you going on those long late nights in the lab too! It is so important to have an area that is your own even if it is surrounded by other people in the office that is going to help you get to the end of that day and make the most of each and every day – because trust me those days will quickly become fewer and fewer and the pressure to finish and submit only gets bigger so you need an area that will help you work!


Headphones will be your saviour!

These are an essential part of being a PhD student in the lab, or even in the office if you need to shut out your noisy colleagues. Whether it’s music, podcasts or audiobooks you listen to, it can make even the most dull and tedious of tasks like loading a 384-well plate for qPCR or aliquotting 100 plus vials of that new growth factor that was delivered a breeze. Ideally, invest in some wireless headphones to avoid dragging your beakers, pipette tips and nasty chemicals across the bench and causing spillages and breakages all over the floor. I love listening to language podcasts whilst working to try and improve my linguistic skills so you can often find me wandering around the lab speaking French, asking where I can find the train station and ordering some roast beef! Noise-cancelling headphones are also useful for drowning out your lab mates when they’re being annoying – just kidding, I never do that I swear!



Keep your supervisors and lab mates on side!

Speaking of lab mates, keep them on Team You! That goes for all your supervisors too – no matter how difficult that may be!

The vast majority of lab mates will help you out you just need to ask them! They will also be the ones that train you in all the different experiments you need to learn – so please, please, please listen to them and I mean actually listen and take in what they are saying. They don’t expect you to know everything after just one time, but if you are asking them the same question for the sixth time in a row when they’ve asked you to write things down – they are going to get a bit peeved off! Also, make sure you do your lab chores to keep in your lab mates’ good books whether that is making up the Western blotting buffers, refilling the ethanol bottles, emptying the bins or restocking the stripettes drawer – just do it! It will make your life easier when it has all been restocked before you want to use it and your lab mates’ life easier! Keeping them on side will maintain that support network that they offer you. You can keep asking them questions about things you’re unsure of and they will share those tips and tricks for the experiments so you can keep those precious results coming – as well as all the non-lab advice about where the best restaurant is in town as they have been there longer than you!

If you have that support network, you must talk to them if you have any problems. No one can help you if they don’t know about an issue and then they think you’re a) not listening to them or b) not doing anything in the lab if you’re not producing any results – whether those results are good or bad it doesn’t matter! That tip extends to your relationship with your supervisor.

Your relationship with your PhD supervisor is undeniably one of the most important aspects of your PhD journey. Great supervisors are supportive and inspiring, and push you to grow and shape you into the scientist you were born to be! But as with most relationships – it’s a two way street! If you’re not pulling your weight in the lab to progress, then they are not going to stick their neck out to help you decipher a problem, discuss your work or give you advice on how to nail that conference abstract or get that dream job.

Luckily I only have two supervisors which makes my life far easier as they are less likely to disagree on which path to follow and what experiments to do next – and so it is easier to keep them all on side. But I still pull my weight and keep them updated on what I’ve been doing in the lab whether I have good news or bad news to share! Your supervisor will appreciate the communication and being kept in the loop. After all, they did all the work to write the grant and get the funding for you do to your research and they chose you to be a part of their lab! Don’t make them regret it!


 It is hard!

You will be pulling your hair out! You will be questioning why you started and you will be questioning if you can actually do it! Once again it is a normal part of the PhD journey. There are highs and there are lows, but unfortunately mainly lows. But when you get that one high and you get that break through, it is so incredibly worth all the hours, blood sweat and tears and you forget about all the dark days that got you to that point. Trust me!

The first few months of my PhD was testing out all the different antibodies I needed and optimising them for Western blots and immunocytochemistry. I didn’t feel like I was getting anywhere because there were so many that didn’t work. But since then I’ve just got on with it and generated lots of interesting data which I’ve written up into a 220 page transfer thesis recently! You need to manage actually being in the lab, with reading to make sure you know about what advances there are in your fields of interest while trying to maintain your mental health and have a social life and any writing you may need to do for reports or theses or publications! There is always something you need to be juggling. You will panic at the beginning but by the end you will be a pro at prioritising and time management!

That support network I’ve mentioned before – it is essential to surviving a PhD. Colleagues, friends and family are all going to be there for you. So spend some time with them, take your mind of all things lab and listen to how much they want you to succeed and how much they are supporting you!


 Never compare yourself and your PhD to others

Much like your DNA is unique to you, your PhD is also unique to you! Each student, even within your own lab group, has different experiments to do and some of those experiments may take longer than yours or maybe not as long as yours. They might be doing an optimised method that is routinely used whereas you are developing a new technique from scratch. They seem to have so many more results than you. They have been to more conferences than you! The thoughts of self-doubt mounting and mounting!

All of that does not matter! You could write an entire PhD thesis full of experiments that revealed no new data. In fact, those results in themselves are new data and information because it is showing you that Protein A is not affecting Protein B for example. There will always be something useful that will come out of it.

I have been quite lucky in the fact that I feel I can organise myself and time manage quite well, so I am often reeling out Western blot after Western blot, and in addition to being very lucky in the fact that every avenue I have explored so far in my research has produced some really interesting data. But I’ve also seen fellow students in the lab have to wait months to get that first result. Now it might look bad if you weren’t in the lab all the time, but these guys are hard workers and it’s just the nature of their PhD that requires a longer time between getting results.

As long as you’re on top of the things you need to do for your thesis, then that should be your main focus and priority. Yes, help friends out if they need it, because you might want them to help you out at some point down the road too. But what results you have and what results they have are incomparable and not a reflection of your capabilities in the lab!




I’m not going to lie to you – those feelings of self-doubt and uncertainty will hit you hard at some point during your PhD journey, but they do eventually subside once you earn your metaphorical lab PhD stripes.

Before you know it your time in the lab will be up and you will be a Doctor! You will be an expert in your field and you would have gained so many other skills than just doing a PCR experiment or staining some cells. Stick at it, talk to people about lab stuff and things outside the lab, but most importantly enjoy the experience!
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